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Seniority (Medical, health)
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Aga Khan Hospitals
Health care + 1 more
Description
Requirements
- Master’s degree in bioinformatics, Computational Biology, Genomics, Molecular Biology, or a related field.
- A PhD in a relevant discipline is an added advantage.
- Additional training or certification in clinical genomics, molecular diagnostics, or data science is desirable.
Relevant Experience
- Minimum 2–3 years of experience in clinical or translational bioinformatics, ideally with NGS data analysis.
- Proficiency with bioinformatics tools and programming languages (e.g., Python, R, bash, workflow managers like Nextflow or Snakemake).
- Experience with standard variant annotation and filtering tools (e.g., VEP, ANNOVAR, GATK, bcftools, samtools).
- Strong working knowledge of human genetics, including Mendelian inheritance, variant pathogenicity, and cancer genomics.
- Familiarity with clinical variant classification guidelines (e.g., ACMG, AMP, CAP).
- Excellent analytical and problem-solving skills.
- Effective verbal and written communication skills to present results to non-technical audiences
Personal Characteristics & Behaviours
- Analytical and Detail-Oriented: Demonstrates strong attention to accuracy and precision when handling complex genomic data and variant interpretations.
- Collaborative: Works effectively within interdisciplinary teams of clinicians, laboratory scientists, and researchers, fostering open communication and shared goals.
- Maintains the highest standards of integrity and confidentiality when handling sensitive patient genetic information.
- Organized and Accountable: Manages multiple analyses and reporting timelines efficiently while maintaining thorough documentation.
- Effective Communicator: Able to clearly explain complex genomic concepts to non-specialist audiences, including clinicians and administrators.
- Committed to continuous improvement and adherence to clinical laboratory standards and best practices
Responsibilities
Genomic Data Analysis and Interpretation
- Process and analyze NGS data from germline and somatic sources (e.g., whole exome sequencing, targeted panels).
- Perform quality control, alignment, variant calling, annotation, and filtering of sequencing data.
- Interpret and classify genetic variants based on clinical relevance using established guidelines (e.g., ACMG/AMP).
Clinical Reporting and Collaboration
- Collaborate with clinical laboratory scientists, physicians, and genetic counselors to review variant interpretations.
- Contribute to multidisciplinary discussions for patient case reviews.
- Participate with clinicians in preparing clinical reports that summarize genomic findings in a clear and actionable manner.
Data Management, Tools, and Pipeline Optimization
- Maintain and enhance bioinformatics pipelines and databases used in variant analysis.
- Implement best practices for data management, version control, and documentation.
- Evaluate new bioinformatics tools and methods to improve analysis accuracy and efficiency.
Research, Innovation, and Capacity Building
- Support research projects focused on rare genetic disorders and cancer genomics.
- Contribute to publications, presentations, and development of new analytical approaches.
- Provide training or mentorship to junior staff and students in genomic data analysis.
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